Browsing by Author "Fang Tan"

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    Gnotobiotic models: Powerful tools for deeply understanding intestinal microbiota-host interactions in aquaculture. Aquaculture, 517: 734800. https://doi.org/10.1016/j.aquaculture.2019.734800.
    (Elsevier, 2020-02-25) Meiling Zhang; Chengjie Shan; Fang Tan; Samwel Mchele Limbu; Liqiao Chen; Zhen-Yu Du
    Intestinal microbiota plays profound roles in host nutrition, physiology, and evolution. The development of DNA sequencing technologies has increased dramatically research on fish intestinal microbiota. However, most studies conducted so far have focused on the microbial structure and diversity. Studies targeting the exact function of commensal microbes in aquatic animals are still scarce, which limits the application of microbiota related knowledge in aquaculture. Gnotobiotic models (animals cultured in axenic conditions or with defined microbial lineages) are excellent tools for identifying the molecular interactions between intestinal microbiota and host, which drive studies of microbiota from correlation to causality in mammals. In recent decades, gnotobiotic fish models have been established and applied in aquaculture research. This review summarizes the colonization conditions in gnotobiotic zebrafish model and its application in understanding intestinal microbiota-host interactions in aquaculture. Furthermore, methods and research progress on other gnotobiotic models including freshwater and marine fishes, molluscs and crustaceans are also discussed. Application of gnotobiotic models in aquaculture has deepened our understanding of the relationship between the host and intestinal microbiota, which will facilitate the modulation of intestinal microbiota for production of healthy animals and sustainable development of aquaculture.
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    The responses of germ-free zebrafish (Danio rerio) to varying bacterial concentrations, colonization time points and exposure duration. Frontiers in Microbiology 10; Article 2156; 1 - 13.
    (Frontiers Media SA, 2019-09-18) Fang Tan; Samwel Mchele Limbu; Ye Qian; Fang Qiao; Zhen-Yu Du; Meiling Zhang
    Colonizing germ-free (GF) zebrafish with specific bacterial species provides the possibility of understanding the influence on host biological processes including gene expression, development, immunity, and behavioral responses. It also enlightens our understanding on the host-microbe interactions within the physiological context of a living host. However, the responses of GF zebrafish to various colonization conditions such as bacterial concentrations, colonization time points, and exposure duration remain unclear. To address this issue, we explored the responses of GF zebrafish by using two bacterial species at varying concentrations, colonization time points and exposure duration. Therefore, we mono-associated GF zebrafish with Escherichia coli DH5α or Bacillus subtilis WB800N at concentrations ranging from 102 to 107 CFU/ml either at 3 day post fertilization (dpf) or 5 dpf for 24 or 48 h. We evaluated the responses of GF zebrafish by analyzing the survival rate, colonization efficiency, nutrients metabolism, intestinal cell proliferation, innate immunity, stress, and behavior responses by comparing it to conventionally raised zebrafish (CONR) and GF zebrafish. The results indicated that the final bacteria concentrations ranging from 102 to 104 CFU/ml did not cause any mortality when GF mono-associated larvae were exposed to either E. coli DH5α or B. subtilis WB800N at 3 or 5 dpf, while concentrations ranging from 106 to 107 CFU/ml increased the mortality, particularly for 5 dpf owing to the decrease in dissolved oxygen level. The E. coli DH5α mainly induced the expression of genes related to nutrients metabolism, cell proliferation and immunity, while B. subtilis WB800N mainly upregulated the expression of genes related to immunity and stress responses. Moreover, our data revealed that GF zebrafish showed higher levels of physical activity than CONR and the microbial colonization reduced the hyperactivity of GF zebrafish, suggesting colonization of bacteria affected behavior characteristics. This study provides useful information on bacterial colonization of GF zebrafish and the interaction between the host and microbiota.